Doc: Browser-tests updated.

2014/06/17 Marc's email plus a few updates.
Germline: Provide icons for special germlines
server : install script for server + browser + fastCGI wrapper + scheduller
main.js : change default cgi address
Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/vidjil/vidjil
database.js : ssl check
database.js : use flash message instead of popup
server: apache install
database.js : ssl cert flag
README.org: travis-ci.org badge
README.org: GPLv3+ badge
should-to-tap.sh: dumps test + .log on stderr when a .should_get fails

This should ease debug when receiving mails from Jenkins.
vidjil.cpp: boolean out_segmented, similar to out_unsegmented

We will soon produce segmented.vdj.fa only when it is requested.
vidjil.cpp: output 'out/segmented.vdj.fa' only when the new option '-U' is set.

A very long time ago, 'out/segmented.vdj.fa' was considered to be
the main output of Vidjil, giving the (heuristic) segmentation of
each read. However, when many reads are segmented, writing this file
to the disk can slow the software (until 25%)... and this file
was used only to debug. By default, this file is now not produced.

The main output, with a summary of windows and representative, is in
'out/windows.fa', 'out/seq/clone.fa-' and now 'out/vidjil.data'.
algo.org: 'out/segmented.vdj.fa' and new option '-U'