Merge branch 'master' into dev
cleaned up changesubmitpbs.py
updated changeinputs
updated changeinputs.py to make a root directory for the simulation
updated the executables copied to the root directory of the simulation
updated intensity.f90 according to the directory changes made in changeinput.py
merged changeinput and changesubmitpbs
after merging creation of input and submit files in one script, it has been renamed createinputs.py, and changesubmit has been deleted
clean up of directories
Merge branch 'dev'