Updated plotResults to use MatplotLib, need to put into main method/bash script
Updated plotResults.py, haven't touched main
Fixed a bad commit
Removed .pyc files, updated .gitignore
Cleaned out more junk files.
plotResults.py supports multiple plots
Integrated plot results into RunTHetA.py
Can plot without read depth file.
Cleaned up plotting code, updated MANUAL.txt
Updated
Updated install script
deleted some dumb mistakes
Removed buld files
updated gitignore
Fixed silly comma error
Fixed argeparse mistake:
Reduced size of plots
Merge branch 'master' of https://bitbucket.org/raphaellab/theta
Fixed multiprocessing queue problem on Macs
Updated GetPrefix to accept new arguments