fixed several bugs in code to run DGEclust
added R script to run DESeq analysis and compare the results to DGEclust results
added SQL command to add info to DB about which sequences are plastid encoded
added script to run Corset on multimapped bowtie results
fixed typo (space after -x)
added summary of steps and info about dependancies
added info about DGEClust
added method to sum count totals over all leaves within a species