Variant and VariantStats interface slightly modified
Merge branch 'develop' of github.com:opencb/java-libs into develop
List of effects of a variant initialized in constructor
QueryResult automatically sets the result type
QueryResponse stores its basic information in attributes, and optional data in an extra Map
Properly set result type in QueryResult in any case the data structure is modified
Unnecessary dependencies removed from POM file
sqlite-jdbc dependency restablished and QueryResult NullPointerException solved
CLI OptionFactory class created
Added PolyPhen & SIFT to EffectCalculator. Added Getters/Setters to VariantInfo
Merge branch 'feature/newIndex' into develop
Added a TODO in EffectCalculator. We need two methods: with and without polyphen/sift calculation
When a chromosome starts with 'chr' or 'chrom' we erase this prefix. 'chrom2' -> '2'
Added javaDoc to parseChromosome
Added addAttribute and toString to Variant Class
Refactoring:
    New Runner/Task schema.
All uses of VcfRecord converted to Variant
Writers use Variant instead of VcfRecord
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
Added includestats/effect/samples attributes to writers