Add -omi option
default multiple.bam off
seg fault
Remove printing filenames in MosaikBuild

Version: 2.1.60
Try to fix the problem of solid readnames, but nothing happen
	new file:   networkFile/retrainCode/attachXC/xc_pe.cpp
	new file:   networkFile/retrainCode/attachXC/xc_se.cpp
	new file:   mq_train_float.cpp
	new file:   parameter_parser_float.cpp
	new file:   parameter_parser_float.h
	new file:   sam_parser_float.cpp
	new file:   sam_parser_float.h
	modified:   ../../../Makefile
	new file:   Makefile
	modified:   xc_pe.cpp
	modified:   xc_se.cpp
	new file:   networkFile/retrainCode/trainNetwork/Makefile
	new file:   networkFile/retrainCode/trainNetwork/convert.h
	modified:   networkFile/retrainCode/trainNetwork/parameter_parser_float.cpp
	new file:   networkFile/retrainCode/trainNetwork/string_converter.h
	modified:   ../../../demo/Align.sh
	modified:   ../../../demo/Build.sh
	new file:   Makefile
	modified:   attachXC/Makefile
	modified:   trainNetwork/Makefile
New demo
Version 2.1.67
	modified:   README
	modified:   README
	modified:   Align.sh
	modified:   Build.sh
	modified:   RetrainMQ.sh
Merge branch 'master' into multiple
Version 2.1.71; no multiple.bam as default
-omi: incomplete multiple.bam; chr ids and positions only
-om: complete multiple.bam
Correct typos in README and quiet options of MosaikBuild and MosaikAligner.
Remove CorrectHomopolymerGapOrder; fix the seg fault; add VERBOSE_DEBUG
Version 2.1.73