Made changes nik asked for.
Major changes to Ch 3: first steps.
edits to biblio
modify figure captions C3
Added figure labels for C5
make all
fixed html conflict
Merge branch 'master' of https://github.com/grunwaldlab/Population_Genetics_in_R
started modification on C3
Started on Data preparation
Added monpop data set to data preparation
Add genind2genalex
Added images for Data Preparation
Continued progress.
Ran through examples of genalex data.
First draft finished.
Modified chapter 2
reran Ch 2
Added links to drop down

These are not finished yet. I need to figure out a way to automagically
rename the files in a logical manner so we don’t run into this mess
again.
propagated headers.