Added subsample support.
Test code for writing contigs from previous assembly when an assembly is killed.
Bugfix for writing contigs from previous iteration.
fixed: config wasn't checking for runProject
remove instantiated classes from job queue
make sure base is imported
fix order
oops, cut and paste error
oops, more cut and paste error
to_job is class method and not instance method
to_job is class method and not instance method
to_job shouldn't call __class__
make sure ARC.runners is imported
messages are no longer passed around
fixed issue with checker params
make a base submit functions and fix an old instance submission line
fixed find and replace recusion hell
Some changes to include more info in plots.
Fixes for runlogplots and a new summary plots script.
make sure that the refrences to the passed job q and params are removed and a little cleanup