update cl
MANTA-120 adjust split read scoring function
MANTA-120 adjust split mapq values for tier1/2
improve somatic score debug output
update cl
MANTA-120 attempt to window split alignments
MANTA-120 several bugfixes for the long-read adjustments
MANTA-120 refresh format
MANTA-120 abandon 'perfect' lnlhood concept
Update source header to include 2014
Merge branch 'master' into MANTA-78
MANTA-78 Adding some debug out