Update __init__.py
Update __init__.py
whoops.
return self from enter so that you can get the time later
I think this works.
Added protein ligand  PDB file for testing conect.
Merge pull request #215 from kyleabeauchamp/connect2

Connect2
Added atom_indices to legacy loader.
Added np import to test.
Merge pull request #217 from kyleabeauchamp/atom_indices_lh5

Atom indices lh5
hbonds code
add an assert to the test, and fix it for python3
xh donors
check both a1 and a0 against water
Include this function in the documentation, and slight reformatting of the docstring so that the docs come out correctly
Merge pull request #218 from rmcgibbo/hbonds

Identification of hydrogen bonds
Move RMSD onto the trajectory object
Working version of superpose
a couple minor changes
Add comments about the interleaved store