[FEATURE] add samcat app for concatenation and conversion of SAM/BAM files
[FIX] replaced CharString by std::string
[FIX] registered samcat for KNIME and test system
[FIX] cosmetics
Merge pull request #284 from weese/feature/app-samcat

[FEATURE] added a new app for SAM/BAM concatenation and conversion
[FIX] replaced C++11 dependency by boost::math for isnan, warnings removed
Merge pull request #290 from weese/hotfix/snp-store

[FIX] fixed snp_store under Windows (master)
[FEATURE] moved fiona from sandbox_weese to github
[FIX] switched to mismatches-only mode
[FIX] re-enabled old behavior, indel correction, only mismatches in overlap, consensus, max overlapsum
[FIX] unused-variable-warning removed
[FIX] fixed concurrency bug
[FIX] restored ISMB behavior with defines, added define sections for
ISMB and indels
[FIX] removed overlapSumCutoff hack
increased allowed overlap errors to at least 2
Merge branch 'master' of github.com:seqan/seqan into feature/fiona
[FEATURE] Added a very simple app determines for each read in a reference file if it has an entry in the provided sam files.
[INTERNAL] Moved from extras to core.
[DOC, INTERNAL] Added a read and made some minor description changes.
[FIX] fixed snp_store test under Windows