Added some source code comments highlighting were Torque/PBS parameters are internally passed to the BiocParallel+BatchJobs machinery.  Eventually, we want to make it possible to specify/request the number of cores each job should have access to so that we can utilize multi-core options of external tools such as 'bowtie2 -p <#cores>' and 'tophat2 -p <#cores>'

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3563 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Version: 1.5.5 [2014-03-09]
o Updated package dependencies.
o Package requires R (>= 2.15.1) [and Bioc (>= 2.11.0)].


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3564 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Version: 0.5.1 [2014-03-09]
o Updated package dependencies.
o Package requires R (>= 3.0.2) [and Bioc (>= 2.13.0)]. 

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3565 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3566 edb9625f-4e0d-4859-8d74-9fd3b1da38cb