--methylationType CHG requires --strandSpecific. Closes #72
Moved from —-ignoreStart/—-ignoreEnd to the more general and useful —-ignoreCycles.
Refactored unit tests to reflect this change. 
Still need to test this on “real” data.
Moved from —-ignoreStart/—-ignoreEnd to the more general and useful —-ignoreCycles.
Refactored unit tests to reflect this change. 
Still need to test this on “real” data.
Closes #71.
Merge branch 'ignore_by_seq_cycle' of https://github.com/PeteHaitch/comethylation into ignore_by_seq_cycle
Complete redesign of command line interface to simplify it (closes #74).
Updated examples to use Bismark v0.12.2 (closes #65).
Updated READMEs to reflect changes in command line arguments.
Fixed bug in parsing multiple calls of --methylation-type.