minor changes for legends
font change
very minor
simplified making YpermCorr main figure
added option for not drawing titles
fixed flux permuation correlation plots for supporting info
minor reorganization
partly updated README and added mindisj sources and c intermediates
changing some heading sizes
changing a heading
major README improvements

Numerous updates involving organization, instructions, and links to resources.
minor clarification
added license
further work on portability; still need to handle _main and _cmdline .c and .o generation
successfully built using ATS includes and portale C code
fixed a bug
Update README.md