Updated POST /analyses errors for invalid path-lists.
CORE-6175: populate the "input" array for fAPI jobs
CORE-6155: fixed a database conversion error
CORE-6161 converted count-uuids ctor to func.
CORE-6161 optimized uuid count query
CORE-6175 Added metadactyl.analyses/pre-process-jex-submission.

The metadactyl.analyses.base/build-submission function now includes an 'input' array for every step (see commit 8f2779076e67eba8889200d1caae96bfdfca7beb) so that the batch logic can look for path-list files for FAPI jobs too.
The metadactyl.analyses/do-jex-submission function will now remove the 'input' array from FAPI job steps before submitting to the JEX.
fixed a problem with flag parameters being formatted incorrectly