All source tree structure is reconstructed to use the JavaFX Maven Plugin.
http://zenjava.com/javafx/maven/fix-classpath.html

JavaFX Maven Plugin offers a way to compile/deploy/run a JavaFX (2.2+) code by using Maven
from within Linux, Mac OS X and Microsoft Windows.

For more detail, see JavaFX Maven Plugin Web site:
http://zenjava.com/javafx/maven/index.html