parsnp 1.0: New formula

Rapid bacterial core genome alignment and SNP detection

Closes #1566.

Signed-off-by: Shaun Jackman <sjackman@gmail.com>
parsnp: add 1.0 bottle.
Octave: changle angled includes to quote includes.

This makes it possible for other software to build upon Octave,
e.g., Shogun.

Closes #1561.
mira 4.0.2: Add doi and tag
allpaths-lg 50378: Change single quotes to double
abyss-explorer 1.3.4: Remove require "formula"
abyss-explorer: add 1.3.4 bottle.