updated some javadoc
dependency version update
format in sources
Guice module
moved missed ontology formats
removed needless defensive copy
removed old profile classes and tests. Tests moved to owlapitools

owlapitools profile classes will be moved in place of the exisiting
profiles
deprecated code removed
fixes #78 functional parser swallows ontology already exists exception
replaced weak cache in IRI with LoaderCache
guava 16.0.1
file creation from tests removed
owlapitools profiles and fixers included