New parameter defaults for NGS copy number segmentation tool.
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'upstream/master'
BLAST, MAFFT and some EMBOSS commands added
Fix backport
Add logging for get and put in filebroker
Merge branch 'data_beta' of https://github.com/chipster/chipster.git into data_beta
Create config parameter for rest logging
transkriptome-index support for tophat2 tools
Fix cpdb input type default
Update and install Picard and RSeQC
Merge branch 'master' of https://github.com/chipster/chipster.git
Some emboss manuals added.
delete columns fixed
Merge branch 'master' of https://github.com/chipster/chipster.git
Delete column bug corrected
Merge remote-tracking branch 'upstream/master'
Increase session replay test timeout to three hours
Merge branch 'master' into data_beta
Corrected typo in Bowtie2 tools.