remove old stat code
Merge branch 'master' of ssh://pb:2203/vcf_crumbs
refactoring. Name change to some scripts
some pep8 fixes
some pep8 fixes
Merge branch 'master' of ssh://pb:2203/vcf_crumbs
compare_vcfs_samples implemented
choose_samples moved to statistics
added new plots for snv stats.New binary to generate statistics and
plots
num genotypes added to qual vs depth box plot
bugfixes: RuntimeErrors where fixed when there was not data
GT removed from call data
VcfStats_old removed
remove old test code of old vcfstats.
new analisys in calculate_vcf_stats
allele counts logic moved to its own class
bugfix. vcfstats failed when the genotyped wasn't called
Allelecounts2D now uses tuples of allles instead of genotypes
depth calculation was wrong in snv annotation. TODO fix tests
fix running filters with eclipse. Bugfixes to update code to the new
get_call_data
draw_snv_stats binary removed