Started with the loci picking and BED file generation
Got random selection of sites from MAF file and bed file generation working
Fixing @RG info on bam files
Create README.md
Just need to parse bam-readcount output now
Merge branch 'master' of github.com:atcg/tortGen
Everything tentatively working
Added example output for 10k loci
Added 100,000 locus output file
Adding pairwise distance file
pca script from counts
.
covariance matrix
Added Jessica's pairwise pi script
Merge branch 'master' of github.com:atcg/tortGen
pca plotting
.
Merge remote-tracking branch 'phoebe/master'
maps with pcs
Add 'tortGen/' from commit 'a008e530ca0d19a5ee3305bae4e4de9144e3f9be'

git-subtree-dir: tortGen
git-subtree-mainline: 258b96319950d3d0917b4f75b9ce94c6fdd56ddc
git-subtree-split: a008e530ca0d19a5ee3305bae4e4de9144e3f9be