updated, it includes now how to use EST_GeneBuilder
Description of how to run cDNA analysis. Very similar to EST_analysis.txt
Some changes from Eduardo, plus switching GB_conf.pl to GeneConf.pm
Added which GenerConf options to be set for each stage.

Added info about needing meta table entry for assembly.default
Added info about needing entry for assembly.default in meta table
Removed references to EST_GOLDEN_PATH
Put in info about meta table entries
Update of doc after taking out mcl source code from ensembl-external cvs repository.
Update
Update
some notes added
Documenting use of -chromo_coords options for pm_bestmatch.pl
some extra info added about database preparation before delivery
more things added about those crucial and dangerous final steps in the genebuild
more updates
added list of pre-genebuild checks
by no means complete (e.g. pruning stuff needs finishing)
please add/amend as necessary
more checks added to the list for the post_GeneBuild
more details added
some clarifications added
Update
Update