Merge remote-tracking branch 'mg8-remote/devel' into devel2
Merge branch 'devel' of github.com:wtsi-npg/npg_tracking into devel2
Merge pull request #30 from wtsi-npg/devel

wtsi-devel to my devel
Merge branch 'devel' of github.com:wtsi-npg/npg_tracking into devel2
Merge remote-tracking branch 'wtsi/devel' into devel
code improvements, POD, PBP
RSC keywords removed; appropriate usage of Readonly module; $VERSION variable added to scripts and modules where it was missing; distribution test reconfigured to test for correspondence of teh packag eand module versions
build file - remove Readonly module as prerequisite since it is not needed anymore for teh evaluation of of the $VERSION variable; change version of files and modules whenever ACTION_code method of the builder is run
Merge branch 'devel' of github.com:wtsi-npg/npg_tracking into devel2
allow staging daemon to check progress by looking for .bcl.gz files
Merge pull request #156 from mgcam/devel

RSC keywords removed, build procedure refined, appropriate use of Readonly module
Merge branch 'devel' of github.com:wtsi-npg/npg_tracking into devel2

Conflicts:
	Changes
Merge pull request #157 from dkj/devel2

check progress in staging by .bcl.gz files
Merge pull request #158 from wtsi-npg/devel

pull request from wtsi devel to master to create release 77.0
Merge pull request #159 from wtsi-npg/master

Merge pull request #158 from wtsi-npg/devel
Updates for handling references with transcriptome version
unused templates removed; samplesheets regenerated when the existing file is likely to originate  from an earlier or unknown run
Changes update; do not attempt to address a scenario with two pending runs for the same flowcell in the samplesheet daemon
modified so that a default transcriptome should not be used
ensure copyright belongs to GRL