FeatureFinderMultiplex

The FeatureFinderMultiplex TOPP tool can detect peptide features in MS1 data. It is particularly suited for the analysis of labelled experiments, such as SILAC or Dimethyl labelling. The main algorithm was previously submitted in pull requests #868 and #889. - This pull requests contains the user interface, calculation of the fold changes and the export to the final data formats: consensusXML, featureXML and mzQuantML. 
So try ++fit here...

sent from my smartphone -- you may keep any typos you find.
On Aug 23, 2014 7:44 PM, "Stephan Aiche" <notifications@github.com> wrote:

> In src/topp/FeatureFinderMultiplex.cpp:
>
> > +      std::vector<ConsensusFeature::Ratio> rts;
> > +      for (std::vector<MSQuantifications::Assay>::const_iterator ait = quantifications.getAssays().begin() + 1; ait != quantifications.getAssays().end(); ++ait)
> > +      {
> > +        ConsensusFeature::Ratio r;
> > +        r.numerator_ref_ = String(quantifications.getAssays().begin()->uid_);
> > +        r.denominator_ref_ = String(ait->uid_);
> > +        r.description_.push_back("Simple ratio calc");
> > +        r.description_.push_back("light to medium/.../heavy");
> > +        rts.push_back(r);
> > +      }
> > +
> > +      const ConsensusFeature::HandleSetType& feature_handles = cit->getFeatures();
> > +      if (feature_handles.size() > 1)
> > +      {
> > +        std::set<FeatureHandle, FeatureHandle::IndexLess>::const_iterator fit = feature_handles.begin();                 // this is unlabeled
> > +        fit++;
>
> cppcheck complains on this ++ as it is a postfix increment on a
> non-primitive type
>
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> <https://github.com/OpenMS/OpenMS/pull/947/files#r16631902>.
>