Commiting structure to develop ARACNE inference app
First complete version for aracne app source code
Fix issue with indexes
Fixes to display only final edges and create new column in network table
Fix regarding DPI implementation. New names for created nodes
Change bundle name and add checking for missing values
New options to specify TF list and hub genes
Change data storing structure, previous one was taking too much memory. Add new modes that require a new class called Thresholds as well as other changes.
Change data storing structure, previous one was taking too much memory. Add new modes that require a new class called Thresholds as well as other changes.
Several improvemenst to store files in the right place and fix some other problems or improve display of parameters
Several changes to adapt aracne to new cyni API as well as new Cytoscape release
Several changes to fix issues discovered by tests against original java version
Add new cyni API and new API compatibility
Changing group Id's to new fr.systemsbiology according to new Cyni API
Merge branch 'release/aracne-1.0.0-beta1'