PolymuttDenovoFilter requires bam_readcount_version
Genome::Model::Tools::Analysis::Concordance requires readcount version
gmt somatic read-counts uses readcount version
Remove unused use_readcounts option
gmt somatic ultra-high-confidence now requires readcount version
dv2/filter/polymuttdenovo now requires bam_readcount_version.
Clinseq commands now require bam-readcount-version.

For now, the version is a hardcoded calculated property in Clinseq
models. It should be moved to processing profiles and backfilled.
bam_readcount_version is a processing profile param
Provide bam_readcount_version in test to fix failure
re-use test processing profile for clinseq models

This fails otherwise since a parameter has been added to clinseq
processing profiles, previously there were no params.
bam_readcount_version is not optional in clinseq pp
provide bam_readcount_version to profile
Add required params to clinseq profile factory
Clinseq profile factory uses the current readcount version.

Factory generated processing profiles no longer die when a production
profile exists with the same parameters.
correct long-standing spelling error!
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
Initial revision of GermlineOnly variant report and plan files.
clean up class params