change mode
auto build and perl deply code
Renamed
Limit number of processes required to complete Xsteps
Merge pull request #3 from cancerit/Xstep-modulus

Limit number of processes required to complete Mstep and Esteps.
Added a split_concat process, removed the need to unlink glob a lod of files as we're already doing remove_tree
Pull update adding limits and commit changes to add concat_split step
Compilation errors - opts not options
Added split_concat to valid processes
Added split_concat to valid processes and max processes hash
tmp file location and config file, alg bean, cov arr, prob arr location converted to tmpdir
Added tmpdir and paths to alg_bean, config, prob and cov array files
tmp file location and config file, alg bean, cov arr, prob arr location converted to tmpdir
Added tmpdir and paths to alg_bean, config, prob and cov array files
tmp file location and config file, alg bean, cov arr, prob arr location converted to tmpdir
tmp file location and config file, alg bean, cov arr, prob arr location converted to tmpdir
Fixed bug where cov arrays were same location as alg_bean
Changes to namings and minor format issues
Removed check for limit in initial method checks. This messes with the multiple steps using limit later on.
Add mergeCavemanResults to bin directory

Added a copy of the CaVEMan executable mergeCavemanResults to install directory as it is required by the cgpCaVEManWrapper.