liblinear: use checksummed patches
libmms: use checksummed patches
libnet: use checksummed patches
liboil: use checksummed patches
lsdvd: use checksummed patches
madplay: use checksummed patches
mmv: use checksummed patches
mp3info: use checksummed patches
mmv: fix build with clang
mpack: use checksummed patches
newt: use checksummed patches
nvi: use checksummed patches
ogmtools: use checksummed patches
cc: filter more flags clang hates.

Should help with the Xcode 5.1 madness.

Closes #27549.
orbit: use checksummed patches
orientdb: use checksummed patches
par: use checksummed patches
pdksh: use checksummed patches
Ensure patch cache path is unique even when checksum is missing
pgplot: use checksummed patches