Initial commit
initial release of editor codes

initial release of HELMEditor source codes
clean up HELM Editor sample codes
clean up monomer categorization

update HELMNotationToolkit-1.0.jar and republish HELMEditor-1.0
add .gitignore file

add .gitignore file
republish HELM Editor 1.0 javadoc

republish HELM Editor 1.0 javadoc
sort monomers in monomer browser based on their IDs
show monomer ID, natural analog and name in monomer tooltip
move HELM Editor configuration folder to .helm/editor;
replace everything in conf resources except user.property
replace old PME icon with new HELM icon
publish HELM Editor version 1.0.1

update HELM NotationToolkit to 1.0.1;
update monomer categorization, include Roche AA monomers;
build and publish HELM Editor version 1.0.1
fix bug #8 with regard to connection direction

fix bug #8 with regard to connection direction, now source and target
can be switched in the connection notation
address issue #1, expose canonical HELM in Editor

Added "Canonical HELM Notation" into View, Copy and Save menu
fix issue #9 about square bracket

The toolkit handles CHEM monomers without using square bracket to
enclose monomer ID or extended SMILES, since simple CHEM polymer
contains only one monomer. Implemented add and remove square bracket
routines to handle notation I/O in editor. Input notation with or
without square brackets can loaded, while output HELM notation will
contain square bracket and output canonical HELM will not contain square
bracket.
publish and release HELMEditor-1.1

With fixes to isssues 1, 8 and 9
make sure .helm folder is created locally

fix bug that if .helm folder does not exist locally, the application
won't launch
add isPouptTrigger() for mousePressed even to support Context Menu in Mac OS
add manifest attributes to jars required by j7u51

add manifest attributes to jars required by j7u51
change codebase to pistoiahelm.github.io

change codebase to pistoiahelm.github.io from pistoiahelm.github.com
ME: Add Eclipse project files.