Changed all scripts to use .Row instead of .HPF_ID to reduce mapping of variables. Improved runtime and efficiency of many scripts. Modified topFuncs to start from root and leaf (topFuncs_old.m - modified old topFuncs). Seems like starting from leaf might be better in terms of bindingData perf. Generating protSim and protFuncs for different database separately and merging to get consensus later due to possible problems with removeOverlap methodology (too many diff lengths and repeats).
Changed genClusterTree mainly to test different cluster dist and pdist algorithms