init
added lyve-SET submodule so that I can get the scheduler
some cleanup
added a progress bar for making fasta files from fastq
added TODO for fastx toolkit conversion of fastq files
added a database managing tool. Adding is enabled, but other functions are not there yet.
added a database managing tool. Adding is enabled, but other functions are not there yet.
added a file locking module. Revising the ksnp wrapper.
some minor fixes
adding and removing of reads is better supported
adding ksnp executable merge_fasta_reads
deletes the temporary directory under the output directory. Added kSNP exec to the directory
changed names to include the lyve name
added kSNP in its entirety
added PATH inside of the scripts to include kSNP
more scripts for pairwise distances
Hierarchical clustering
Added some comments
fixed a syntax error
Added a minimum threshold for count in a cluster