replaceRows,NULL-method now in S4Vectors.
Switch back to matrix for internalPos (possible due to changes in S4Vectors).
as.data.frame,GTuples-method
Notes on clone/update of GTuples
Code tidy
split GTuples via inheritance
Code tidying
Clarified subsetting operations of GTuples
Fix findOverlaps-based methods for GTuples and clarified findOverlaps and findOverlaps-based methods for GTuples/GTuplesList signatures.
sort GTuples via inheritance
remove mcols
Fix extraColumnSlots in as.data.frame,GTuples-method
Fix tuples,GTuples-method
Add tuples,GTuplesList and tuples<-,GTuplesList methods
Improvements to show,GTuplesList-method
Update TODOs
R CMD CHECK bug squashing
Update man pages
IMPORT 'methods'
Code prettying