Removed computed data files, pyc files, and other generated files
Committing first overall update of code
- changed parse scripts to not have hard-coded filenames
- moved data files into data directory
- various parsing improvements
- various other edits that were done too long ago to remember
Completely rewrote code base from scratch in an attempt to reimplement the algorithm. Also:
- Improved mim and hpo parsing
- Added orphanet disease frequencies
- Removed pre-processing step from analysis
- Add test data in test/