Rename RemoveStarSequences to RemoveUnknownSequences
only allow 20 known amino acids
Code improvements

- Use + instead of * in the regex so as to not allow empty strings
- Emmit a warning message if a sequence is being filtered
use one version of bam-rc
use Genome::Info::CodonToAminoAcid to get list of valid amino acids instead of hardcoding them
create regular expression only once
update clinseq blessed.

This build uses bam-readcount0.6 for the clonality step in ClinSeq.
We are transitioning to using just one bam-readcount version inside
ClinSeq and tracking that version in the processing-profile.
fixed typos
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add identifier
handle undefined sequence string
preserve encapsulation
Use sanitize_string_for_filesystem to make model name safe for path.
add test to make sure CopyCat failures are caught
alter error handling to pass through errors to exit code, and also alter traceback command to actually print traceback
Update with new som-var build
Merge pull request #104 from ernfrid/quit_eating_errors_copycat

Quit eating errors copycat
a bug fix => to =;a little refactoring of params
Merge pull request #101 from nnutter/check-for-name-updates

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improve the params construction, no overwrite