Version: 0.4.38 [2014-04-13]
o Added support for paired-end BWA alignment in addition already
  supported single-end BWA alignment.
o Now paired-end alignments are tagged as "pe".  Previously they were
  tagged as "paired", which was ambigous in case for instance
  tumor-normal pair data was analyzed.

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3602 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Typo in filename.

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3603 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
o CLEANUP: Now FastQCReporter outputs sample directories without the
  default and auxillary '_fastqc' suffix. 

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3604 edb9625f-4e0d-4859-8d74-9fd3b1da38cb