Adding extra output and removing unused file
Merge branch 'master' of github.com:kellrott/tcga_realign
Merge remote-tracking branch 'origin/cwilks2'
Fixing python script path
Adding host notation to log folder
Merge pull request #3 from kellrott/cwilks2a

fixed uploaded state bug in synapse monitor script
Improving how the end-to-end job operates
Children of job_all will now use their project directory as their work directory base
Adding program to scan status of cluster
Moving job_all.sh to use directories for the pid
Improving the cluster scanning function