Added another data.frame for just the clinical samples. Changed the variable name Sample.wkl to just Sample. Rearranged a few things so that the order of the script made more sense and was more robust to changes. Changed the data class of UPN to numeric once I was finished extracting it using RegEx.
Modified EposP3 script to remove problem sample and to remove isotope collapse section. Removed the problem samples from the EnegP4 script, too.
Added a bit at the end looking at how long each sample took for peak picking.
Merge branch 'master' of https://github.com/shirewoman2/Busulfan