Added a flag indicating if a mutation matches the long form of a protein. This can be later used for a better disambiguation
Added facilities to convert a mutation mention into a HGVS compliant mention; also we save three boolean flags indicating the location (i.e., DNA, protein, or ambigious); finally we resolved a small error in normalizeSNP
Uses now the normalizeSNP method in order to normalize a dbSNP mention to the respective entry
Mutation mentions recognized by MutationFinder or following even older nomenclatures are now disambiguated into PSM/NSM if possible. For instance, if one of the alleles contains the long form of an ambigious mutation mention we set the type to PSM as we can distinguish it here
Resolved a bug which lead to problems distinguishing different mutation types