BUG: 3121. Added module wiki doc page link

git-svn-id: http://svn.slicer.org/Slicer4/trunk@23078 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Allow loading of bspline transforms with IdentityTransform bulk component

git-svn-id: http://svn.slicer.org/Slicer4/trunk@23079 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: 3618. Changed interpolation mode to linear in the vtkMRMLVolumeNode::ApplyNonLinearTransform()

git-svn-id: http://svn.slicer.org/Slicer4/trunk@23080 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: 2346. Made default fiber solid color to white matter. 

git-svn-id: http://svn.slicer.org/Slicer4/trunk@23081 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: move the User and File node types up to superclass
Support for user and file procedural color nodes requires that these
node types be moved into the color node superclass, not just defined
on the color table node.

Issue: 3573



git-svn-id: http://svn.slicer.org/Slicer4/trunk@23082 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Expand scalar range options

Add the ScalarRangeFlag on the display node, test it, use it in the Model
display node.
Provide a GUI interface for it in the Models Scalars GUI.
Use it in the model displayable manager.
Separate out the auto scalar range setting from updating the poly data
in the model display node.

This expands the options from just using the scalar range of the data
to allowing the user to select using the scalar range defined on the
display node, the range on the color node, or the range of the data
type (use this last with caution, TBD: readjusting the minimum and
maximum values allowed on the range slider). Keeps the default
behaviour of AutoScalarRange and Data. The interaction of Auto/Manual
and the range flags might need some tweaking.
Also keeps the deep copy of the color look up table in the model displayable
manager - monitor for performance issues.
Expands the model displayable manager to work with procedural color nodes,
this required copying the color transfer function to a look up table to
support setting the range. Using a table with 256 entries for now.
UI full change due to having to run dos2unix on it to get it commited
to git without whitespace errors.

Issue #3573



git-svn-id: http://svn.slicer.org/Slicer4/trunk@23083 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Add procedural color storage node and GUI support

Add a new storage node, register it, test it.
Added support for copying procedural nodes so that users can copy
an existing one and then save it to disk.
LoadColorFile expanded to work with both color table and procedural
color node loading.
TBD: add support for .cxml
Added support in the Colors gui to display and edit color transfer
functions (Continuous frame, with a ctkVTKScalarsToColorsWidget).
As well as allowing the scalar bar widget to be set from a procedural
color node.

Issue #3573



git-svn-id: http://svn.slicer.org/Slicer4/trunk@23084 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: unify how add/remove handle error cases

Remove the error print out when removing a view node that
is not in the list, since when adding a view node that is
already in the list no error is printed. The code recovers
gracefully, no need to post an error.

Issue #3216



git-svn-id: http://svn.slicer.org/Slicer4/trunk@23085 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: expand the view combo box to work on abstract view nodes

Removed the limitation on the display node view combo box that
only allowed selecting 3D view nodes, now all subclasses of
abstract view nodes can be used. Slice nodes and chart view
nodes are now allowed. This fixes the issue that while a
display node could have a slice node added to it's list of
view nodes, this combo box would remove it as it wasn't a
3d view node.
Update the volume rendering module widget to use the new combo
box code, limiting the view nodes to 3d ones since volume
rendering can't be shown in slice views.

Issue #3216



git-svn-id: http://svn.slicer.org/Slicer4/trunk@23086 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: add support for markups in different views

Added support in the displayable managers to check if
a markup is visible in a given view. Added testing.
Added a GUI drop down box to allow the user to
manipulate the view node settings (in the Advanced
Display group)

Resolves Issue #3216



git-svn-id: http://svn.slicer.org/Slicer4/trunk@23087 3bd1e089-480b-0410-8dfb-8563597acbee
COMP: Fix windows packaging error disabling GitPython and PyGithub

The problem is that the directory structure is too deep. Some path
have a length greater than 260 characters and seems to be an issue
for the CMake install command due to the windows maximum path
length limitation [1]

Waiting this issue is addressed, this commit disables the package on
Windows to ensure packages will be uploaded.

[1] http://msdn.microsoft.com/en-us/library/windows/desktop/aa365247%28v=vs.85%29.aspx#maxpath

git-svn-id: http://svn.slicer.org/Slicer4/trunk@23088 3bd1e089-480b-0410-8dfb-8563597acbee