TACHYON-198 Move UserConf usage to use TachyonConf

This PR consist next steps to integrate new configuration work:
-) Remove usage of UserConf
-) Push TachyonConf to Tachyon Hadoop's file system (aka TFS class).
-) Remove UserConf.java from repo.
I saw some protected variables in the code too. Let's file separate pr to address this style of programming.