Removed the executable bit from all .java files
Removed executable bit from *.pde files
Unset the executable bit on xml files
unset executable bit for .txt files
unset executable bit in miscellaneous files
Unset executable bit on a few more files
Bring in upstream changes from 'master'
Merge pull request #2977 from kfeuz/filePermissions

Unset executable bit on non-executable files
more notes about encodings
Removed reference ZIP file, preparing to relocate it, added to .gitignore, re: processing-docs#159
deal with a couple warnings
better parameter name
fix regression using ctrl-alt-n for new tab (fixes #2979)
notes about issue
resize working, but flickering