add option --skipempty in graphics.dotplot()
fix bug for self comparison in graphics.dotplot() when --skipempty is on
make sure the labels don't crash the dotplot PDF
checkpoint in projects.ies.deletion()
use dynamic cutoff based on outlier testing in projects.ies.deletion()
automatically detect dual peaks in insert size distribution in
formats.bed.pairs()
add projects.ies.variation()
add option --diversity in projects.ies.variation()
output novel IESs in projects.ies.variation()
automatically selects 63mer and 127mer based on K-mer size in assembly.soap
add formats.fastq.is_fastq()
place legend on top right for assembly.ks.histogram()
mark up title in assembly.kmer.histogram()
fix graphics.landscape.heatmap()
add option --strip_names to gff.format()
+ Fix parsing logic of psl block elements