merge develop -D org: PR 1960 (Remove cut link 11882)
merge develop -D org: PR 2005 (assist #11091: refactor server DB queries for hierarchy navigation)
merge develop -D org: PR 2113 (Remove user (rebased onto develop))
merge develop -D org: PR 2122 (Ij insight fixed develop)
merge develop -D org: PR 2127 (Working view to email announcements to selected users, groups, email addresses and/or all users)
merge develop -D org: PR 2131 (Sort images timestamp 11986 (rebased onto develop))
merge develop -D org: PR 2132 (Owner remove last user 11984 (rebased onto develop))
merge develop -D org: PR 2135 (Homebrew backport (rebased onto develop))
merge develop -D org: PR 2136 (Bio-Formats restructuring (rebased onto develop))
merge develop -D org: PR 2137 (Auto-updating copyright date via Django. See #11937)
merge develop -D org: PR 2138 (Pass Image IDs to script when Wells selected. See #11835)
merge develop -D org: PR 2141 (Close parsed files after each indexing iteration  (fixes #11949) (rebased onto develop))
merge develop -D org: PR 2142 (Limit max file size for `FullTextParser` (see #11979) (rebased onto develop))
merge develop -D org

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2036 joshmoore 'DSL Map Type' (exclude comment)
  # PR 2128 jburel 'Open with develop' (label: breaking)
  # PR 1742 aleksandra-tarkowska '11591 user ip' (label: breaking)
  # PR 2140 jballanc 'Disable concurrent Quartz scheduling of indexer (rebased onto develop)' (status: failure)
  # PR 1385 manics 'Update the OMERO VirtualBox image' (exclude comment)
  # PR 2106 snoopycrimecop 'Update develop submodules' (status: pending)
Already up-to-date.

Merged PRs:
  # PR 1960 will-moore 'Remove cut link 11882'
  # PR 2005 mtbc 'assist #11091: refactor server DB queries for hierarchy navigation'
  # PR 2113 jburel 'Remove user (rebased onto develop)'
  # PR 2122 jburel 'Ij insight fixed develop'
  # PR 2127 dpwrussell 'Working view to email announcements to selected users, groups, email addresses and/or all users'
  # PR 2131 will-moore 'Sort images timestamp 11986 (rebased onto develop)'
  # PR 2132 will-moore 'Owner remove last user 11984 (rebased onto develop)'
  # PR 2135 sbesson 'Homebrew backport (rebased onto develop)'
  # PR 2136 sbesson 'Bio-Formats restructuring (rebased onto develop)'
  # PR 2137 will-moore 'Auto-updating copyright date via Django. See #11937'
  # PR 2138 will-moore 'Pass Image IDs to script when Wells selected. See #11835'
  # PR 2141 jballanc 'Close parsed files after each indexing iteration  (fixes #11949) (rebased onto develop)'
  # PR 2142 jballanc 'Limit max file size for `FullTextParser` (see #11979) (rebased onto develop)'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 942 hflynn 'Final BF doc updates for 5 release (rebased onto develop)' (label: exclude)
  # PR 881 qidane 'New wavelength' (exclude comment)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (label: exclude)
Updating af4ff14..62dd08d
Merged PRs (fast-forward):
  # PR 948 hflynn 'Updating Aperio ImageScope weblink (rebased onto develop)'
  # PR 923 LeeKamentsky 'Patch for CellProfiler issue 1043 - Cellomics files with renamed filenames'
  # PR 935 sbesson 'Logback 2 (incl. docs) (rebased onto develop)'
  # PR 926 ctrueden 'Cache OME-XML between ImagePluses'
  # PR 906 sbesson 'MATLAB toolbox: package and release fixes (rebased onto develop)'
  # PR 897 melissalinkert 'Implement pre-loading for .sdt files in the interest of performance. (rebased onto develop)'
  # PR 891 melissalinkert 'Fix tiled TIFF reading and writing (rebased onto develop)'
  # PR 886 melissalinkert 'Flex: be more permissive in parsing IFDs and XML'
  # PR 884 rleigh-dundee 'Make a buildable source release'
  # PR 885 melissalinkert 'Correctly set Modulo annotations for multi-Image datasets'
  # PR 910 joshmoore 'Logback conversion (rebased onto develop)'
  # PR 934 ctrueden 'Remove Eclipse metadata file'
  # PR 938 hflynn 'Fixing IDL links (rebased onto develop)'
  # PR 898 joshmoore 'Create bioformats_package.jar (rebased onto develop)'
  # PR 866 melissalinkert 'Update POMs to point to mirror of the cppwrap plugin (rebased onto develop)'

Merged PRs:
  # PR 528 melissalinkert 'Tile performance improvements for VMS and NDPI'
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files'
  # PR 858 melissalinkert 'Initial support for Veeco AFM data'
  # PR 859 melissalinkert 'Assorted metadata/tile parsing fixes'
  # PR 945 rleigh-dundee 'cpp: bioformats: Add MetadataMap class for original metadata'
  # PR 949 rleigh-dundee 'C++ fixes to work around clang++/libc++ bugs'
  # PR 950 melissalinkert 'Cellomics: a few fixes for single-file datasets'
  # PR 954 melissalinkert 'Fix ImageScope links to match the committed documentation (rebased onto develop)'
Conflicting PRs (not included):
  # PR 944 melissalinkert 'Remaining renaming'

Repository: ome/scripts
Updating 3e885a7..b78c468
Merged PRs (fast-forward):
  # PR 60 will-moore 'Kymograph_Analysis creates single csv. See #11909'

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 685 jballanc 'Updated section on search re-indexing (see #11995) (rebased onto develop)' (exclude comment)
  # PR 683 sbesson 'Add directed graphs for Bio-Formats latest jobs' (label: breaking)
Updating 593cd49..228dac9
Merged PRs (fast-forward):
  # PR 682 sbesson 'Document scc 0.5.0 changes'
  # PR 674 hflynn 'Add details for omero_home usage (rebased onto develop)'
  # PR 675 ximenesuk 'Update cli-import page (rebased on develop)'
  # PR 673 hflynn 'what's new for 5.0 updates (rebased onto develop)'
  # PR 663 manics 'Windows 64-bit python 11899 (rebased onto develop)'
  # PR 660 sbesson 'Update documentation to use Pillow instead of PIL (rebased onto develop)'
  # PR 671 hflynn 'Using right redirects for 5 downloads (rebased onto develop)'
  # PR 665 hflynn 'Update 5 docs for release changes  (rebased onto develop)'
  # PR 659 ximenesuk 'Update docs for import and logging fixes (rebased on develop)'

Merged PRs:
  # PR 626 pwalczysko 'Add new Squash tutorial and screenshots'
  # PR 681 sbesson 'Document Homebrew formula upgrade to 5.0.0 (rebased onto develop)'
  # PR 684 jballanc 'Update documentation for search indexer and related troubleshooting steps (see #11995) (rebased onto develop)'

Generated by OMERO-5.1-merge-push#74 (http://ci.openmicroscopy.org/job/OMERO-5.1-merge-push/74/)