Initial check-in of star and tophat indexing pre-steps. Tophat has been tested but star awaits v2.4.0 of STAR from Alex.
Initial check-in of RSEM quantification for long RNA-seq.  Not tested yet as it is waiting on STAR v2.4.0 from Alex.
Version v2 check-in of star run scripts for RNA-seq long.  Not tested yet... waiting on STAR 2.4.0 from Alex.
Updated version of some eap_run scripts for RNA-seq long.  Nothing substantial.