Work on Comet in progress.
Work in progress - set up dummy test cases for the parameter mapping.
Commet supports first few basic parameters to be mapped.
Covering last corner case (two fixed mods on same residue)
Comet work in progress
Working on variable mods support.
Instrument support.
Min enzyme termini setting.
Started work on enzyme.
Comet enzyme support.
More in line with Surendra's ideas. We tweak multiple parameters based on the precision of the instrument.
Database is ignored. Will be passed on command line.
The config file needs to specify version.
Adding comet calls.
Comet runs with a sample .mzML file, produces .sqt file.
The check makes sure the result file is reasonably big.
A very lame test (we should check the contents), but content checking is quite difficult.
Comet switched to pep.xml
CometWorker took place of Myrimatch for QuaMeter.
Adding dependency on comet.
Since comet does not support --version call, we check it just by seeing the file is/is not there.