Merge pull request #67 from vezzi/devel

Debugging pipeline
bugfixes
Bugfixes relating to mean_autosomal_coverage updates, etc.
Charon fixed so the seqrun_reset test now succeeds
TODO
Add new functions with better naming system
Pipeline working! For the moment
Revert testing script to include runs
Update base ngi_config to change db path (temporary?)
Lower log level from info to warn
Merge pull request #68 from mariogiov/devel

This appears to be working: Everything looks ok a lot of improvement in the code!!!
Merge branch 'NGI' into devel