Merge pull request #278 from gonuke/rearrange_dirs

Add missing files in common & dagmcnp5.make
Move contents of fluka/src up one level
Update CMakeModule for directure structure change
Merge pull request #281 from julry/fluka_dirs

Fluka dirs
added ability to add install prefix and thus installs libs & headers
updated tally to build from master CMakeFile.txt
Merge pull request #282 from makeclean/updated_install

added ability to add install prefix and thus installs libs & headers
Moved meshtal_funcs to be part of dagtally library.  Some small changes to build system and hardcoding to successfully build MCNP5