Create Short_Scaffold_PE-fetch_FQ.pl

Uses the output from the Stacks_Summary.pl script to search read 1 fastq data for sequences matching each RAD locus.  Coordinate data for each "hit" is collected and used to gather locus specific read 2 sequences.  A fastq file containing 30 read 1 sequences and up to 60 read 2 sequences is output for each RAD locus in the provided Stacks_Summary file.  Standard output shows TagID, sequence, the number of read 1 "hits" found, the number of read 2 hits output and the number of read 2 hits overlapping the read 1 sequence.  This script is designed to run using raw read 1 and read 2 fastq files as input.