shogen2
use new clasp-3.0.1
update links to sample data
cleanup, use pyasp-1.3, version bump to shogen2-1.1
use pyasp-1.3.1
use pyasp-1.3.3
update CHANGES.txt
Rename README to README.md
Update setup.py
Merge pull request #1 from bioasp/master

port to python3
Merge branch 'master' into shogen2
mv shogen2.py shogen.py
port to python3
use rst instead of md
Merge branch 'master' of https://github.com/sthiele/shogen into sthiele-master

Conflicts:
	CHANGES.txt
	shogen.py
	src/encodings/convert_sds.lp
	src/encodings/filter_couples.lp
	src/query.py
improved filtering
cleanup
git push origin masterMerge branch 'sthiele-master'