Added a daemon config for Jenkins on Ubuntu Precise, based on the one
for Debian Lenny
Merge pull request #135 from wtsi-npg/master

pull release 76.0 from master back to devel
Merge remote-tracking branch 'wtsi-npg/devel' into devel
Add Jenkins CLI argument to set the session timeout to 6 hours.
Removed redundant module.
An update to keep the original tests and also allow for testing any
optional command line arguments we need to add in future.
Use predicate/clearer method to check for the presence of a session timeout.

Set the default to 6 hours.
Placate Perlcritic
Merge pull request #136 from keithj/devel

Add Jenkins CLI argument to set the session timeout
Use scratch110 for references
Update Changes file for both changes
Merge pull request #137 from KateTaylor/use_scratch_110

Use scratch110 for references
Merge pull request #139 from wtsi-npg/devel

pull release 76.1 from wtsi-npg devel to master
Merge pull request #140 from wtsi-npg/master

pull release 76.1 from wtsi-npg master back to devel
Override staging deamon start command to get logs on hosts
Use subroutine to determine sfarea from hostname
Override log_dir to empty string to avoid confusion
Check that the log directory exists and is writable, using nfs to be visible from login nodes
lims samplesheet driver bug fix - spiked phix tag index should be defined for plexes; method to return the name of the env. var for the cached samplesheet file; misleading xml lims driver POD entry fixed
Merge pull request #141 from mgcam/devel

lims samplesheet driver update