Latest Version of structural comparison script
Merge branch 'master' of https://github.com/jorvis/biocode
merge
removed old files
Merge pull request #20 from jonathancrabtree/master

Add --lineage, --include_sequence, and --output_dir to convert_gff3_to_gbk.py
Removed telomere reporting due to application-specific implementation.
Added generic gene.add_RNA() method
Added check for embedded FASTA within the GFF3 file, with proper error message suggesting use of --fasta option if needed.