Set Objective.NominalMagnification in the SVS reader
TiffSaver: pad truncated strips with zeros
JPEG-2000: allow boxing to be stripped

Also, fix how quality settings are propagated.
TiffWriter: update internal API scope to ease subclassing
TiffWriter: make checkParams protected so that subclasses can use it
JPEG2000Codec: make sure the last input stream is closed
Fix JPEG-2000 options to unbreak tests
Merge pull request #979 from melissalinkert/tiff-export-fixes

SVS import and TIFF export fixes
Merge pull request #984 from melissalinkert/sdt-preload

Enable SDT plane preloading by default
Merge pull request #993 from bpindelski/eclipse

Update docs regarding BF and Eclipse (see #12127).
Merge pull request #997 from melissalinkert/rebased/dev_5_0/patch-1

Make macro recording work with Exporter (rebased onto dev_5_0)
merge dev_5_0 -D org: PR 951 (Fix up Bio-Formats POMs)
merge dev_5_0 -D org: PR 972 (CZI: restrict dimension adjustment)
merge dev_5_0 -D org: PR 987 (Volocity: parse timestamps from .atsf files)
merge dev_5_0 -D org: PR 989 (ND2: always set the field index to 2)
merge dev_5_0 -D org: PR 998 (Micromanager fixes)
merge dev_5_0 -D org: PR 1000 (Metadata fixes)
merge dev_5_0 -D org: PR 1003 (Large fileset performance improvements)
merge dev_5_0 -D org

Repository: openmicroscopy/bioformats
Already up-to-date.

Merged PRs:
  # PR 951 ctrueden 'Fix up Bio-Formats POMs'
  # PR 972 melissalinkert 'CZI: restrict dimension adjustment'
  # PR 987 melissalinkert 'Volocity: parse timestamps from .atsf files'
  # PR 989 melissalinkert 'ND2: always set the field index to 2'
  # PR 998 melissalinkert 'Micromanager fixes'
  # PR 1000 melissalinkert 'Metadata fixes'
  # PR 1003 melissalinkert 'Large fileset performance improvements'

Generated by BIOFORMATS-5.0-merge-daily#777 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-merge-daily/777/)