changed graph.R and build_western.R
to use lindgren_nu1 structure
added eta sampler to mcmc.R
further mods to code to get lindgren working
monkeyed with fixing filenames/dir struc in graph reading
fixed bug in mcmc.R that was forcing precision
to be TPS and not Lindgren
updates to MCMC to fix the
scaling of the variance
fianlized non-adaptive code; having fixed issues with updating for mu
some updates to joint sampling code
changed MCMC code to improve speed
and fixed bugs in changed code
initial change to RW on log(sigma2)
updated file names in master.sh
added buffer
to modeling
updated a bit of coding and labbook;
probably nothing major but nto sure as some done during paleon underc course
updated mcmc.R
to force copy of U[[]] and Uc[[]] so that code runs ok on R 3.1
updated mcmc.R to allow
nbhd = bin with updating of sigma2/alpha jointly and adaptive on sigma2;
took out jointSample and replaced with check of bin or not bin
wrote draft code for calc_cv_western.R
for doing CV calcs; cleaned up code for building and fitting with cv stuff included
fixed openmp version
of compute_cell_probabilities for use in drawProportions
modified probs computation
in mcmcAuxil.R to use foreach
did some reworking of file names;
fixed code so it works for tps
fixed file name issue in calc_cv code