adding certs
Merge branch 'master' of github.com:MG-RAST/pipeline
add dockerfiles
add bowtie image
update source file
fix source files
another fix source files
replace more containers
fgs does not work, fall back
switch to base image
fix path for fgs
add genecall image
added qiime pick_closed_reference_otus
add check for data field and debug info
moved qiime task to end of workflow document
make taskid the same as rank
change input for qiime
fix qiime input
Merge pull request #341 from jaredbischof/master

Fix to expanded_sims2overview so M5NR and M5RNA summaries are being computed again.
Merge pull request #342 from jaredbischof/master

Debugged error in summary script.