tools/nycr: Make nycr generate parsers which have no global static state

This means we can parse two things at once and have correct line/column numbers, as well as the correct list of errors.

Also switch from yylineno / flex's automatic line number tracking to our own because flex forgets to initialize it's variables when using a string buffer....
ThrowSystemError is a noreturn function
jhm: If a program which is run for a job is newer than the job, re-run the job
jhm/timestamp: Move functions to cc
base/error: Move Abort() to be an error utility function

This is a first step in removing the old <base/error> hierarchy
Remove <base/error> per #21

All code is translated to use <base/thrower> generally.
Merge pull request #169 from cmaloney/linenumbers

Remove global state from Nycr generated parsers