Was not calling MetadataTools.populatePixels, so xml metadata was incorrect
added IM3 reader to list of formats

Conflicts:

	components/formats-api/src/loci/formats/readers.txt
Respect metadata filtering settings when populating MetadataStore
Merge pull request #1451 from melissalinkert/im3-metadata

Fix im3 metadata
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 1435 (Ordered MapPairs implementation)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1448 melissalinkert 'Metamorph: allow both sanitized and unsanitized delimiters' (user: melissalinkert)
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes' (user: melissalinkert)
  # PR 1420 qidane 'Updating samples and adding units samples' (user: qidane)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1431 rleigh-dundee 'Specification: Add XML catalogues for released schemas' (user: rleigh-dundee)
  # PR 1442 bramalingam 'Update roi handler' (user: bramalingam)
  # PR 1453 jburel 'Fix mock object to match changes from int to double for channel' (user: jburel)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 1441 melissalinkert 'Fix OME-XML BinData decoding' (user: melissalinkert)
  # PR 1444 snoopycrimecop 'Update auto-generated documentation' (user: snoopycrimecop)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (user: ctrueden)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1437 stelfrich 'Changed handling of empty series names in ND2 files' (user: stelfrich)
  # PR 1366 ctrueden 'Miscellaneous cleanup' (user: ctrueden)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
  # PR 1452 joshmoore 'Use __import__ for generateDS to handle FS case issues' (user: joshmoore)
  # PR 1450 melissalinkert 'Reduce memory needed to open PNG images' (user: melissalinkert)
  # PR 1443 joshmoore 'Genshi ZIP' (user: joshmoore)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
Updating b3962bd..e7ddc61
Previously merged:
  # PR 1451 melissalinkert 'Fix im3 metadata'

Merged PRs:
  # PR 1435 joshmoore 'Ordered MapPairs implementation'

Generated by OME-5.1-breaking-push#213 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/213/)