The DecimalFormats d3 and d2 are one digit too short. This has the
effect the first digit or sign of atom coordinates, occupancy, and
temperature factor are cutoff when using the toPDB method.
Merge branch 'master' of https://github.com/biojava/biojava
made method public
Merge branch 'master' of github.com:pwrose/biojava
Added Java Bean for mmcif category _struct_conn
Merge pull request #96 from pwrose/master

Added Java Bean for mmcif category _struct_conn
Merge pull request #95 from josemduarte/master

Calculation of ASAs: first implementation
Factored out code that makes polymer and intra-group bonds into its own
class so it can be reused by the mmCIF parser. Added code to create
polymer bonds in nucleotides.Added support for _struct_conn records in
mmCIF files.
Merge pull request #97 from pwrose/master

Factored out code that makes polymer and intra-group bonds into its own
Reducing jmol output

Adding set/isVerbose methods to JmolPanel and MyJmolStatusListener
to control verbosity (quiet by default)
Fixing compilation bug.

I had been building against the 1.7 JDK, but the POM specifies 1.6.
Thus JComboBox should not be generic.
Merge pull request #98 from sbliven/master

Reducing jmol output

(Fixed prior compilation bug)
resolving #100
fixing #99
#48 altlocs are now getting rotated for display
Implemented full treatment of xtal info and experimental technique
- some reshuffling of fields in PDBHeader and PDBCrystallographicInfo
- now xtal info is parsed from both PDB and mmCIF (before only from PDB)
- remove deprecated method getHeader/setHeader in Structure
- some additions to the Structure interface e.g. isCrystallographic
- StructureImpl.isNmr() is reimplemented to strictly signal NMR
structures (as the docs say), use nrModels() for multimodels
- a few deprecations
Missing class in last commit