Bumped the backend version to 3.2.8
Added files to filter out in porklock. orbit-condor and gconfd-condor to be exact.
Removed filters of the gconfd and orbit directories, added checks for file/folder validity to porklock.
Added the AccountingGroup setting to the .cmd files generated by the JEX.
CORE-5386: added a conversion for job submissions
Remove gradle build files.
Merge pull request #1 from strootman/removeGradle

Remove gradle build files.
Bumped the version to 3.2.9
Temporary version revert to "3.2.7".
Merge branch 'dev' into rewrite

Conflicts:
	libs/metadactyl/pom.xml
	services/Infosquito/project.clj
	services/NotificationAgent/project.clj
	services/OSM/project.clj
	services/Panopticon/project.clj
	services/clockwork/project.clj
	services/dewey/project.clj
	services/kifshare/kifshare
	services/kifshare/kifshare.spec
	services/kifshare/project.clj
	services/metadactyl-clj/project.clj
	tools/clavin/project.clj
	tools/filetool/project.clj
Bumped versions to 4.0.1
CORE-5386: added columns to the input_output_mappings table to support inputs and outputs in external apps
CORE-5955: updated the app job view endpoint to work with apps that contain both Agave and DE steps
Merge branch 'rewrite' into wrap-irods

Conflicts:
	services/Donkey/project.clj
Merge branch 'wrap-irods' of https://github.com/iPlantCollaborativeOpenSource/DiscoveryEnvironmentBackend into wrap-irods