Initial support for sending metadata to postgres
Add config file for db configuration and fix insert bug
Update dbcodon for new schema
Use refseq instead of refseq2
documentation for counterc
Merge pull request #8 from PDX-Flamingo/countercdoc

documentation for counterc
CounterC tests
fixed test name bug with cow test
fixed typo in five_each
Made the test more readable
Merge pull request #9 from PDX-Flamingo/counterctests

Counterctests
Ignore .venv* when using multiple virtualenvs
Move the C files into /lib
Move count code into codonpdx module
Disable pretty print json formatting by default

This commit adds a -p and --pretty flag to enable pretty print
json. By default pretty printing is disabled to avoid a performance
penalty.

Fixes #5
Cleanup dbcodon to use methods
Merge pull request #10 from PDX-Flamingo/refactor_into_pyproject

Refactor to use standard py project layout
Merge pull request #3 from PDX-Flamingo/dbsupport

Initial support for sending metadata to postgres
Add score calculator script
Code refactor, added functions