Preparing classes and packages for construction of the orthology cache
Ortholog cache foundation. Not entirely finished nor tested
Ortholog cache foundation finished. Tested and prepared to be integrated to the network generation during ortholog protein search
Big refactoring in progress to unify protein orthology search through inParanoid and through the ortholog cache.
Completed protein ortholog cache with integration during network generation.
Fixed some network generation problems.
Rearranged maven dependencies.
Merge pull request #23 from PPiMapBuilder/ortholog-cache

Ortholog cache