I switched the flag as you suggested. I see the update in my version of the
repository, but if its not there, I can go try somewhere else.


On Sun, Apr 13, 2014 at 7:05 PM, Daniel McDonald
<notifications@github.com>wrote:

> In scripts/make_phyla_plots_AGP.py:
>
> > @@ -297,7 +297,7 @@ def main(otu_table, mapping_data, cat_tables, output_dir, sample_type='fecal',
> >           cat_tables=categories,
> >           samples_to_plot=samples,
> >           sample_type=sample_type,
> > -         debug=args.debug)
> > +         debug=eval(args.debug))
>
> btw, I just verified this fix addresses the plot issue. I'll merge once
> this debug flag is addressed
> ... <#1455dc46401307d2_>
> On Sun, Apr 13, 2014 at 5:53 PM, Daniel T. McDonald <
> Daniel.Mcdonald@colorado.edu> wrote: > I recommend adding: > >
> ``action='store_true'`` to > > >
> https://github.com/biocore/American-Gut/blob/master/scripts/make_phyla_plots_AGP.py#L239> > > On Sun, Apr 13, 2014 at 5:36 PM, J W Debelius <
> notifications@github.com>wrote: > In scripts/make_phyla_plots_AGP.py: > >
> > @@ -297,7 +297,7 @@ def main(otu_table, mapping_data, cat_tables,
> output_dir, sample_type='fecal', > > cat_tables=categories, > >
> samples_to_plot=samples, > > sample_type=sample_type, > > -
> debug=args.debug) > > + debug=eval(args.debug)) > > I tried it that way,
> but when I passed only -d it triggered an error. > And, args.debug was a
> string. > > -- > Reply to this email directly or view it on GitHub<
> https://github.com/biocore/American-Gut/pull/87/files#r11568653> > . >
>
> --
> Reply to this email directly or view it on GitHub<https://github.com/biocore/American-Gut/pull/87/files#r11569301>
> .
>