MSMB2.5 Tutorial started
Remove MLE-TNC from scripts
Reduce number of trajs in tutorial
Removed mincounts from BuildMSM
More tutorial changes, added PCCA options for objective function
Minor fixes to unit test PDB naming
added little note in setup.py on how to get dependencies (fastcluster/deap) if they are not found
ensure phi before psi in dihedral preparetrajectory
removed some crud and updated the docstrings a little bit in metrics.py
Fallback to no compression if BLOSC missing
Serializer saves everything as EArray
explictly saying that extra packages are not required in setup.py
Moved some old files to my sandbox
Interactive SCRE script added
New MLE estimator needed tighter xtol convergence condition, was leading to irreproducible results...
Minor Change
Minor Change
Fixed SavePDBs to allow all states
Major changes to tutorial
Major changes to tutorial