initial download
limit on number of lanes
add counter
set correct action and dump opts
output array of files
populate files in run pipeline
add files regex
convert to fastq
convert to fastq
require split bas bax files
rename convert script
array ref passed in to convert method
compress and create fastq check
get stats from fastq file
check for gz fastq
dont zip to stdout
fastqcheck use
full path for fastqcheck file
add check that fastqcheck file exists
add check that fastqcheck file exists array