rdj assembly, fix depthcutoff computation
Merge pull request #484 from ggonnella/rdj_fix_depthcutoff

rdj assembly, fix depthcutoff computation
allow CS/RF/PP in the alignment line
fix splint issues

Splint 3.1.2, Mac OS X
Merge pull request #485 from satta/ltrdebug

allow CS/RF/PP in the alignment line
Merge pull request #486 from satta/splintstuff

fix splint issues
add LTR* input sanity check
extend sanity check of LTRdigest input
src_clean
splint