Fixing temp folder prefix
Merge branch 'master' of github.com:kellrott/tcga_realign
Merge pull request #11 from kellrott/dev_cwilks1

made metadata changes based on OICRs example metadata discussed at the 7...
Merge branch 'master' of github.com:kellrott/tcga_realign
Removing set pipefail because it didn't work under python system call
Adding fail on child exception
Passing back exception for better error output
Merge pull request #12 from kellrott/dev_cwilks1

modified correlation to cutoff at 90% rather than 99%, added check for M...
Merge pull request #13 from kellrott/dev_cwilks1

made previous increase in reads check a wanrning instead of a terminatio...
Refactoring to deal with issues found when running at large scale.
Merge branch 'master' of github.com:kellrott/tcga_realign
Adding missing config file
Fixing bugs related to refactor, adding in test to debug against.
Fixing more bugs
Adding in status tracking and web viewer
Adding non-submitting test stage
Adding in more test cases
Making sure workdir is created
Fixing bad subprocess call
Adding node status information