Add count.seqs command to the end of the script
Reorder blocks so same number of sequences processed w/ & w/o chimeras
Fix problem where V19 libraries were smaller than the mock libraries
Update OTU calcualtion/analysis
Move taxonomy file manipulation out of Rmd into separate R file
Remove whitespace
Remove taxonomy file wrangling code
Add comments
Add call to taxonomy_wrangling.R
Correct a comment to indicate that only the unique sequences are considered in claculation
Fix classification stuff
Add code to pool mocks after unique.seqs and get error rates
Remove bash code for getting error rate after unique.seqs
Get one off errors analysis to work
Add pdfs/*.analysis